Reagents and Resources

Proteomics and Bioinformatics Resources

  • AntibodyPedia—an open-access database of publicly available antibodies against human protein targets
  • BenchSci—a reagent intelligence platform which uses machine learning to decode comprehensive datasets
  • CPTAC—the Clinical Proteomic Tumor Analysis Consortium (CPTAC) brings together leading centers nationwide in a comprehensive and coordinated effort to accelerated the understanding of the molecular basis of cancer through the application of large-scale proteome and genome analysis, or proteogenomics
  • Cytoscape—an open source software platform for visualizing complex networks and integrating these with any type of attribute data.
  • DAVID—the Database for annotation, visualization and integrated discovery
  • dbPTM—an integrated resource for protein post-translational modifications (PTMs)
  • HUPO—The Human Proteome Organization (HUPO) is an international scientific organization representing and promoting proteomics through international cooperation and collaborations by fostering the development of new technologies, techniques and training
  • MassIVE—a community resource for computational mass spectrometry to promote the global, free exchange of mass spectrometry data
  • MaxQuant—a proteomics software package designed for analyzing large mass spectrometric data sets.
  • neXtprot—public beta release to build a comprehensive knowledge platform on human proteins
  • ProteinAtlas—a systematic exploration utility of the human proteome using antibody-based proteomics
  • PeptideAtlas—a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments
  • SwissPalm—a comprehensive database on protein S-palmitoylation
  • Uniprot—a comprehensive, high-quality and freely accessible resources of protein sequence and functional information

Literature Resources

Cedars-Sinai Resources